Key players (not that important to have at the top here) Deepmind Arc Institute Projects brainstorm - Crawler-indexer for relevant studies Database of DSRCT study texts ## Research Agents: List/bases type at the top here for at a glance (and link to section for more detail) **TODO: Make a table here at top -** Columns brainstorm - ID/Name Org Brief description Link Current usage (yes/no or degree of usage lots little rare etc) Utility function - description of what to use it for Requirements or required inputs (single cell data, wgs data, pathology slides etc) | ID | Tagline | Description | Org | Link | Usage | Type | | --------- | ------------------------------------- | ----------- | --- | ---- | ----------- | ----------------- | | Biomni-RO | A General-Purpose Biomedical AI Agent | | | Link | Open Access | Literature review | | | | | | | | | ROBIN: A Multi-Agent System for Automating Scientific Discovery Biomni-R0: A General-Purpose Biomedical AI Agent #### ROBIN: A Multi-Agent System for Automating Scientific Discovery ![[Pasted image 20250918231703.png]] #### Biomni-R0: A General-Purpose Biomedical AI Agent #### PADIT-seq Tool for analysing transcription factor binding better - useful for EWS-WT1 fusion protein DNA-binding prediction! [Multiple overlapping binding sites determine transcription factor occupancy - PubMed](https://pubmed.ncbi.nlm.nih.gov/40903577/) > We propose a model in which TF binding is not determined by individual binding sites, but rather by the sum of multiple, overlapping binding sites. The overlapping binding model explains how competition between paralogous TFs for shared high-affinity binding sites is determined by flanking nucleotides that create differential numbers of overlapping, lower-affinity binding sites. Critically, the model transforms our understanding of noncoding-variant effects, revealing how single nucleotide changes simultaneously alter multiple overlapping sites to additively influence gene expression and human traits, including diseases. Could this help understand +KTS -KTS likely activity better? ## K-Dense Beta Biostate AI research agent into anti aging tech? Is this the David Sinclair one? ![[IMG_7140.jpeg]] Awesome illustration from https://scim.ag/8o1 Grok code - try it out Another great illustration to copy: ![[IMG_7145.jpeg]] From Study https://x.com/daniellanino/status/1904285795143606632?s=46